Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009

Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005

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Emerging Challenges in Multiscale Modeling in Biology.

Open Science: Tools, Approaches, and Implications

Open Science is gathering pace both as a grass roots effort amongst scientists to enable them to share the outputs of their research more effectively, and as a policy initiative for research funders to gain a greater return on their investment. In this workshop, we will discuss the current state of the art in collaborative research tools, the social challenges facing those adopting and advocati...

Genomic Standards Consortium Workshop: Metagenomics, Metadata and Metaanalysis (M3)

The M3 workshop has, as its primary focus, the rapidly growing area of metagenomics, including the metadata standards and the meta-analysis approaches needed to organize, process and interpret metagenomics data. The PSB Workshop builds on the first M3 meeting, a Special Interest Group (SIG) meeting at ISMB 2009, organized by the Genomics Standards Consortium.

From ODES to Language-Based, Executable Models of Biological Systems

Modeling in biology is mainly grounded in mathematics, and specifically on ordinary differential equations (ODE). The programming language approach is a complementary and emergent tool to analyze the dynamics of biological networks. Here we focus on BlenX showing how it is possible to easily re-use ODE models within this framework. A budding yeast cell cycle example demonstrates the advantages ...